PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 341aa    MW: 37901.1 Da    PI: 10.0422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012521genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31274331359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  DCAR_012521 274 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 331
                  9************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.5E-18225270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33260332IPR003657WRKY domain
PROSITE profilePS5081129.884267333IPR003657WRKY domain
SuperFamilySSF1182904.05E-27270332IPR003657WRKY domain
SMARTSM007749.4E-39272332IPR003657WRKY domain
PfamPF031062.4E-27274331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEIEVANKMA VESCHRVLSL MAQPKDQIQY RNMMVETGEA VSKFEKVVSL LNAGLGHARV  60
RRVKNFHTPL PQHILLDSSV GRADCQPKAL QLLSNDFRES PVLDLGSNLK SNLSLGNSSL  120
DLSSNGKNPL QVSQQTPPLS NYHFLQQKYQ LQQQQLKQQA EMMYRRSNSG ISLNFDSSTC  180
TPTMSSSRSF MSSLSVDGSV ANLDGNAFHL IGASRSLDQS SYQHKRRCSA KGDDGSVKCG  240
SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS  300
MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRLPVPSTTT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20265334775WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235315.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-127WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A127AXS50.0A0A127AXS5_PANGI; WRKY2 transcription factor
STRINGVIT_07s0141g00680.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-109WRKY DNA-binding protein 21